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[[FrontPage]] - [[Action Items Related to Transfer to Kajisawa-san>Transfer#AI]] - [[Programs & Scripts>Transfer#ProgramsAndScripts]] - [[Catalogs>Transfer#Catalogs]] - [[Fixed Action Items>Transfer#FixedAIs]] - [[Documents>Transfer#Documents]] * &aname(AI){Action Items Related to Transfer to Kajisawa-san}; [#q87512e3] //- 2015/08/04: executing the procedures in Step 2, 3, and 4 for the newly added 785 IA-excess candidates: &ref(IdonBand_add_150804.dat); //-- these candidates are added because of the changes of (1) limiting magnitudes of 7 IA-bands (i.e., IA464, IA484, IA505, IA527, IA574, IA624, and IA827), (2) the coefficients estimating the frequency-matched continuum, and (3) the equation which judges whether each object is inside or outside of the circular-shaped masked-out regions //--- the limiting magnitudes used originally were old one which were listed in the previous data paper but now were modified by M. Kajisawa on 17th Feb. 2015 --> the limiting magnitudes modified by M. Kajisawa on 17th Feb. 2015 are now adopted; the previous limiting magnitudes were wrong because they were the background fluctuations evaluated without mask to bright objects (email from M. Kajisawa on 16:24 4th Aug. 2015) //--- the coefficients estimating the frequency-matched continuum were originally calculated in another program and then were substituted in the program for Step 1 by reading a data file in which the coefficients rounded up to the third decimal place are written --> the coefficients are now evaluating directly from the effective wavelengths in the program for Step 1 //--- the equation which judges whether an object at (RA,DEC) is inside or outside of the masked-out region with a radius of r centered on (RA0,DEC0) used originally was wrong (dr = sqrt[(RA - RA0)^2 + (DEC - DEC0)^2]) --> the correct equation is now used (dr = acos[cos(DEC)cos(DEC0)cos(RA-RA0) + sin(DEC)sin(DEC0)]) //- showing the 1σ errors of the best-fit model SED for EWobs, Mstar, L(Lya), SFR(Lya), SFR(SED), log10[tau/Gyr], Z, and E(B-V) //- showing the programs, scripts, and catalogs with their manuals to select the IA-excess objects in Step 1, 2, 3, and 4 * &aname(ProgramsAndScripts){Programs & Scripts}; [#s2a2f795] ** All-in-one script [#o3502347] &ref(SelectIAexcessObjects_All.sh); ** Step 0 Related [#fbb88556] - the program to make the catalog [[cosmos_phot_20120626b.tbl]], in which the header and 1st column of the original COSMOS photometric catalog [[cosmos_phot_20120626.tbl]] are removed (written by Y. Shioya): &ref(Transfer-Step0/photcat20.f); - the script to make the input COSMOS photometric catalog [[cosmos_phot_20120626bs.tbl]], in which the objects are listed in ascending order of the ID, from the original COSMOS photometric catalog without its header and 1st column [[cosmos_phot_20120626b.tbl]] (written by Y. Shioya): &ref(Transfer-Step0/DoPhotcat20.sh); - the script to make the input COSMOS photo-z catalog [[photoz_zml_vers2.0_010312-fulls.out]], in which the objects are listed in ascending order of the ID, from the original COSMOS photo-z catalog [[photoz_zml_vers2.0_010312-full.out]] (written by Y. Shioya): &ref(Transfer-Step0/photoz_vers2.0_sort.sh); - the program to make the cross-matched catalogs between the objects in the COSMOS photometric catalog and the objects in the XMM-Newton source catalog or VLA source catalog (written by MARK): &ref(Transfer-Step0/Step0_CrossMatching.f90); -- input files: --- (1) [[cosmos_phot_20120626bs.tbl]]: the latest version of the COSMOS i-band selected photometric catalog including the UltraVISTA DR1 data --- (2) [[photoz_zml_vers2.0_010312-fulls.out]]: the latest version of the COSMOS photo-z catalog: --- (3) [[cosmos_xmm_200811_v2.tbl]]: the latest version of the XMM-Newton source catalog: --- (4) [[vla-cosmos_lp_sources_v2_20080615.tbl]]: the latest version of the VLA source catalog: --- (5) &ref(Transfer-Step1-Catalogs/NewMasking.reg);: the (RA,DEC) information for the masked-out regions defined in the 12 IA-band images by Y. Shioya -- output files: --- (1) &ref(Transfer-Step0/XMM_MatchedCatalog.dat);: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the XMM-Newton source catalog. The cross-matching condition is that the angular separation between the (RA,DEC) of the COSMOS photometric catalog and the XMM-Newton source catalog is less than or equal to the positional error of the XMM-Newton, which is different for each object. --- (2) &ref(Transfer-Step0/VLA_MatchedCatalog.dat);: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the VLA source catalog. The cross-matching condition is that the angular separation between the (RA,DEC) of the COSMOS photometric catalog and the VLA source catalog is less than or equal to 1 arcsec. -- usage (see script, &ref(Transfer-Step0/Step0_CrossMatching.sh);): ./Step0_CrossMatching.out AbsolutePathOfInputFiles AbsolutePathOfOutputFiles (e.g.,) ./Step0_CrossMatching.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step0/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/ ** Step 1 Related [#ef7c0990] - the script to execute the sample selection of Step 1: &ref(Transfer-Step1-Catalogs/Step1.sh); - the program to make the catalog for Step 1 (written by MARK): &ref(Transfer-Step1-Catalogs/Step1.f90); -- input files: --- (1) [[cosmos_phot_20120626bs.tbl]]: the latest version of i-band selected photometric catalog including the UltraVISTA DR1 data --- (2) [[photoz_zml_vers2.0_010312-fulls.out]]: the latest version of photo-z catalog --- (3) &ref(Transfer-Step1-Catalogs/NewMasking.reg);: the (RA,DEC) information for the masked-out regions defined in the 12 IA-band images by Y. Shioya --- (4) &ref(Transfer-Step1-Catalogs/allIAexObj_RA_DEC.txt);: IDs of the Step 1 IA-excess candidates which have been already asked for cross-matching with the Chandra to S. Toft --- (5) &ref(Transfer-Step1-Catalogs/Chandra_AGN_all.txt);: IDs of the AGN candidates detected in Chandra --- (6) &ref(Transfer-Step0/XMM_MatchedCatalog.dat);: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the XMM-Newton source catalog --- (7) &ref(Transfer-Step0/VLA_MatchedCatalog.dat);: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the VLA source catalog -- output files: --- (1) &ref(Transfer-Step1-Catalogs/Step1.dat);: all-in-one catalog of the Step 1 selected IA-excess candidates --- (2) &ref(Transfer-Step1-Catalogs/IdonBand.dat);: a catalog of the Step 1 selected IA-excess candidates in the previous format defined by Y. Shioya -- usage (see above script, &ref(Transfer-Step1-Catalogs/Step1.sh);): ./Step1.out AbsolutePathOfInputFiles AbsolutePathOfOutputFiles (e.g.,) ./Step1.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step0/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/ --- all of the input files must be located in the directory represented as AbsolutePathOfInputFiles --- all of the output files are written in the directory represented as AbsolutePathOfOutputFiles - the program to classify the objects according to their combination of excess IA bands (written by Y. Shioya, modified by MARK): &ref(Transfer-Step1-Catalogs/Step1_makeGroup.f90); -- input file: &ref(Transfer-Step1-Catalogs/IdonBands.dat);, in which the IA-excess candidates are listed in ascending order of an integer that represents the sum of excess IA bands -- output files: --- (1) &ref(Transfer-Step1-Catalogs/group_ionband.dat);: a list of the existing combination of the excess IA bands --- (2) group/****.txt (**** = 0001--9999, which represents the combination of the excess IA bands, &ref(Transfer-Step1-Catalogs/group_150826.tar.gz);): catalogs of the IA-excess candidates with the combination of the excess IA bands -- usage: ./Step1_makeGroup.out AbsolutePathOfInputFiles (e.g.,) ./Step1_makeGroup.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/ ** Step 2 Related [#rbf42b27] - the script to execute the sample selection of Step 2: &ref(Transfer-Step2-Catalogs/Step2.sh); - the program to make the catalog for Step 2: &ref(Transfer-Step2-Catalogs/Step2_zph.f90); -- input files: --- (1) &ref(Transfer-Step1-Catalogs/Step1.dat);: the resultant catalog of the IA-excess candidates selected in Step1 --- (2) PZ/ID.{pz,pz2}: the tables in which the resultant likelihood p(z) and χ_{ν}^2(z) evaluated using EAZY for each object are written --- (3) &ref(Transfer-Step2-Catalogs/IDlist_EAZY);: the list of the IDs which have EAZY output -- output files: --- (1) &ref(Transfer-Step2-Catalogs/Step2.dat);: all-in-one catalog of the Step 2 selected IA-excess candidates --- (2) &ref(Transfer-Step2-Catalogs/IdIsol4.txt);: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya --- (3) &ref(Transfer-Step2-Catalogs/Nexge5.txt);: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya --- (4) &ref(Transfer-Step2-Catalogs/lineID.txt);: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya -- usage (see above script, &ref(Transfer-Step2-Catalogs/Step2.sh);): ./Step2_zph.out AbsolutePathOfStep1.dat AbsolutePathOfOutputFiles (e.g.,) ./Step2_zph.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step2/ --- all of the input files other than Step1.dat must be located in the directory at which the source code is located --- all of the output files are written in the directory represented as AbsolutePathOfOutputFiles ** Step 3 Related [#ff8eb574] *** Making SED templates for SED fitting [#y1ba1cda] - the script to make SED templates for SED fitting: &ref(Transfer-Step3-Catalogs/Step3_makeSEDtemplate.sh); - the program to make SED templates for SED fitting: &ref(Transfer-Step3-Catalogs/Step3_makeSEDtemplate.f); -- input files: --- (1) &ref(Transfer-Step3-Catalogs/filter_cosmos37.dat);: data file in which transmission curves of all of the filter used in the SED fitting are given --- (2) &ref(Transfer-Step3-Catalogs/BC03_TemplateList_young.dat);: name list of the BC03 templates used to make SED templates for young ages --- (3) &ref(Transfer-Step3-Catalogs/BC03_TemplateList_old.dat);: name list of the BC03 templates used to make SED templates for old ages (only for z < 2.5) --- (4) &ref(Transfer-Step3-Catalogs/A0V_KUR_BB.SED);: Kurucz's model for Alpha Lyrae --- (5) &ref(Transfer-Step3-Catalogs/time_BC03.dat);: time array of the BC03 templates --- (6) bc03sed/***: BC03 SED templates --- (7) list of redshifts for which the SED templates are made (sample list: &ref(Transfer-Step3-Catalogs/test.in);) -- output files: --- (1) SEDtemp_z*p***_young.dat: SED templates of young ages used for SED fitting analysis in Step 3 --- (2) (only at z < 2.5) SEDtemp_z*p***_old.dat: SED templates of old ages used for SED fitting analysis in Step 3 -- usage (see above script, &ref(Transfer-Step3-Catalogs/Step3_makeSEDtemplate.sh);): ./Step3_makeSEDtemplate.out InputFileName AbsolutePathOfOutputFiles (e.g.,) ./Step3_makeSEDtemplate.out test.in /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step3/template/ --- all of the input files must be located in the directory with the name of inpdata which locates on the directory where the source code is located --- all of the output files are written in the directory represented as AbsolutePathOfOutputFiles - the program to make simultaneously both (1) the input files for the above program and (2) shell scripts to run the program: &ref(Transfer-Step3-Catalogs/makescripts.f90); -- this program make Ndiv files and Ndiv scripts from a redshift list of a certain type of emitter candidates, where Ndiv is a parameter given to run the program -- input file: one of the following three redshift lists --- (1) &ref(Transfer-Step3-Catalogs/makeSEDtemplate_LAE);: a list of z_ph determined in Step 2 for the LAE candidates --- (2) &ref(Transfer-Step3-Catalogs/makeSEDtemplate_nonLAE);: a list of z_ph determined in Step 2 for the non-LAE emitter candidates --- (3) &ref(Transfer-Step3-Catalogs/makeSEDtemplate_others);: a list of z_ph determined in Step 2 for others -- output files: --- (1) input files for the above program: (ex.) &ref(Transfer-Step3-Catalogs/makeSEDtemplate_LAE1.in); --- (2) shell scripts to run the above program: (ex.) &ref(Transfer-Step3-Catalogs/Step3_makeSEDtemplate.sh); -- usage: ./makescripts.out InputListName Ndiv AbsolutePathOfOutputDirectory (e.g.,) ./makescripts.out makeSEDtemplate_others 48 /home/kobayashi/COSMOS20/source/Step3/ /net/newngli/data/kobayashi/template/others/ --- the input files which are output of this program are written in inpdata/ and the shell scripts are written in scripts/ //- the scripts and lists to make the input files for the SED fittings of low-z emitters (transferred on 2015/07/02): &ref(Step2_lowzSEDfit_scripts.tar.gz); //-- the parent script: &ref(DoMkSSforSF.sh); //--- this script (1) copies IA_zph_out/IAxxx_zph.out to MkSSforSF.in as the input file to the program, (2) executes the program, and (3) moves MkSSforSF.out as the output file from the program to SEDfit_150305_lowz_IAxxx.tcsh //-- the input files for the parent script: &ref(IA427_zph.out); &ref(IA464_zph.out); &ref(IA484_zph.out); &ref(IA505_zph.out); &ref(IA527_zph.out); &ref(IA574_zph.out); &ref(IA624_zph.out); &ref(IA679_zph.out); &ref(IA709_zph.out); &ref(IA738_zph.out); &ref(IA767_zph.out); &ref(IA827_zph.out); //--- in each file, all of the redshifts possible for the filter are written in the following format: [1st column] 3 digits for the IA-band name [other columns] (1)z (2)3 digits for the IA-band name (3)emission line (1:Lya, 2:CIV, 3:CIII], 4:MgII, 5:[OII], 6:[OIII]+Hb, 7:Ha+[NII], 99:others) //-- the source code of the program: &ref(MkSSforSF.f); //--- this program generates the script file for the SED fittings of low-z emitters named "MkSSforSF.out" from the input file named "MkSSforSF.in" //-- the output script files: &ref(SEDfit_150305_lowz_IA427.tcsh); &ref(SEDfit_150305_lowz_IA464.tcsh); &ref(SEDfit_150305_lowz_IA484.tcsh); &ref(SEDfit_150305_lowz_IA505.tcsh); &ref(SEDfit_150305_lowz_IA527.tcsh); &ref(SEDfit_150305_lowz_IA574.tcsh); &ref(SEDfit_150305_lowz_IA624.tcsh); &ref(SEDfit_150305_lowz_IA679.tcsh); &ref(SEDfit_150305_lowz_IA709.tcsh); &ref(SEDfit_150305_lowz_IA738.tcsh); &ref(SEDfit_150305_lowz_IA767.tcsh); &ref(SEDfit_150305_lowz_IA827.tcsh); ** Step 4 Related [#obf8917c] * &aname(Catalogs){Catalogs}; [#ccc78826] ** [[Step 1 Related>Transfer-Step1-Catalogs]] [#be59500f] - catalog of 6208 IA-excess candidates selected in Step 1: &ref(Transfer-Step1-Catalogs/Step1.dat); -- format is written as headers in the above catalog and in [[this page>Transfer-Step1-Catalogs]] -- (2015/08/16) Note: AGN flags for Chandra, XMM, and VLA are not complete yet. //- catalog of 5357 IA-excess candidates selected in Step 1: &ref(Transfer-Step1-Catalogs/Step1.txt); //-- format: (1)ID (2,3)RA,DEC[deg] (4)flag for detection in all 4 IRAC bands[0:no, 1:yes] (5--9)flag for AGN from IRAC color, XMM, Chandra, VLA, and one of them[0:non-AGN, 1:AGN] (10--21)flag of excess IA band for 12 IA bands [0:non-excess, others:excess] (22)N_ex^temp //--- (10)IA427 (11)IA464 (12)IA484 (13)IA505 (14)IA527 (15)IA574 (16)IA624 (17)IA679 (18)IA709 (19)IA738 (20)IA767 (21)IA827 ** [[Step 2 Related>Transfer-Step2-Catalogs]] [#r3ed3887] //- list of IA-band excess candidates: &ref(Transfer-Step2-Catalogs/Step2.txt); //-- format: (1)ID (2,3)RA,DEC[deg] (4)flag for detection in all 4 IRAC bands[0:no, 1:yes] (5--9)flag for AGN from IRAC color, XMM, Chandra, VLA, and one of them[0:non-AGN,1:AGN] (10)Nex^temp (11)Nsol (12--27)quantities related to the primary z_ph solution (28--43)quantities related to the secondary z_ph solution (44--55)flag for 12 IA bands[0:undetected, 1:detected] (56)N_undetectedIA //--- for primary solution : (12)P(z_ph) (13)chi_nu^2(z_ph) (14)z_ph (15--26)line ID for 12 IA bands (1:Lya, 2:CIV, 3:CIII], 4:MgII, 5:[OII], 6:[OIII]+Hb, 7:Ha+[NII], 99:others) (27)N_ex^cons //--- for secondary solution: (28)P(z_ph2)/P(z_ph) (29)chi_nu^2(z_ph2)[-99 for the objects w/o secondary solution] (30)z_ph2[-99 for the objects w/o secondary solution] (31--42)line ID for 12 IA bands (1:Lya, 2:CIV, 3:CIII], 4:MgII, 5:[OII], 6:[OIII]+Hb, 7:Ha+[NII], 99:others) (43)N_ex^cons //--- (15,31,44)IA427 (16,32,45)IA464 (17,33,46)IA484 (18,34,47)IA505 (19,35,48)IA527 (20,36,49)IA574 (21,37,50)IA624 (22,38,51)IA679 (23,39,52)IA709 (24,40,53)IA738 (25,41,54)IA767 (26,42,55)IA827 ** [[Step 3 Related>Transfer-Step3-Catalogs]] [#e1628daa] ** Step 4 Related [#e9450618] * &aname(FixedAIs){Fixed Action Items}; [#p4bdf4d6] ** as of xxx [#cae6e28b] * &aname(Documents){Documents}; [#e19cf007] - Determination of the Masked-out Regions from the 12 IA-band images -- &ref(Cosmos20Ses130618.pdf); &ref(Cosmos20Ses130626.pdf); [[FrontPage]]
