Transfer のバックアップ(No.17)

FrontPage

Action Items Related to Transfer to Kajisawa-san?
Programs & Scripts?
Catalogs?
Fixed Action Items?
Documents?

Action Items Related to Transfer to Kajisawa-san †

2015/08/04: executing the procedures in Step 2, 3, and 4 for the newly added 785 IA-excess candidates: IdonBand_add_150804.dat
- these candidates are added because of the changes of (1) limiting magnitudes of 7 IA-bands (i.e., IA464, IA484, IA505, IA527, IA574, IA624, and IA827), (2) the coefficients estimating the frequency-matched continuum, and (3) the equation which judges whether each object is inside or outside of the circular-shaped masked-out regions
  - the limiting magnitudes used originally were old one which were listed in the previous data paper but now were modified by M. Kajisawa on 17th Feb. 2015 --> the limiting magnitudes modified by M. Kajisawa on 17th Feb. 2015 are now adopted; the previous limiting magnitudes were wrong because they were the background fluctuations evaluated without mask to bright objects (email from M. Kajisawa on 16:24 4th Aug. 2015)
  - the coefficients estimating the frequency-matched continuum were originally calculated in another program and then were substituted in the program for Step 1 by reading a data file in which the coefficients rounded up to the third decimal place are written --> the coefficients are now evaluating directly from the effective wavelengths in the program for Step 1
  - the equation which judges whether an object at (RA,DEC) is inside or outside of the masked-out region with a radius of r centered on (RA0,DEC0) used originally was wrong (dr = sqrt[(RA - RA0)^2 + (DEC - DEC0)^2]) --> the correct equation is now used (dr = acos[cos(DEC)cos(DEC0)cos(RA-RA0) + sin(DEC)sin(DEC0)])

showing the 1σ errors of the best-fit model SED for EWobs, Mstar, L(Lya), SFR(Lya), SFR(SED), log10[tau/Gyr], Z, and E(B-V)

showing the programs, scripts, and catalogs with their manuals to select the IA-excess objects in Step 1, 2, 3, and 4

↑

Programs & Scripts †

↑

All-in-one script †

SelectIAexcessObjects_All.sh

↑

Step 0 Related †

the program to make the catalog cosmos_phot_20120626b.tbl?, in which the header and 1st column of the original COSMOS photometric catalog cosmos_phot_20120626.tbl? are removed (written by Y. Shioya): photcat20.f
the script to make the input COSMOS photometric catalog cosmos_phot_20120626bs.tbl?, in which the objects are listed in ascending order of the ID, from the original COSMOS photometric catalog without its header and 1st column cosmos_phot_20120626b.tbl? (written by Y. Shioya): DoPhotcat20.sh
the script to make the input COSMOS photo-z catalog photoz_zml_vers2.0_010312-fulls.out?, in which the objects are listed in ascending order of the ID, from the original COSMOS photo-z catalog photoz_zml_vers2.0_010312-full.out? (written by Y. Shioya): photoz_vers2.0_sort.sh
the program to make the cross-matched catalogs between the objects in the COSMOS photometric catalog and the objects in the XMM-Newton source catalog or VLA source catalog (written by MARK): Step0_CrossMatching.f90
- input files:
  - (1) cosmos_phot_20120626bs.tbl?: the latest version of the COSMOS i-band selected photometric catalog including the UltraVISTA DR1 data
  - (2) photoz_zml_vers2.0_010312-fulls.out?: the latest version of the COSMOS photo-z catalog:
  - (3) cosmos_xmm_200811_v2.tbl?: the latest version of the XMM-Newton source catalog:
  - (4) vla-cosmos_lp_sources_v2_20080615.tbl?: the latest version of the VLA source catalog:
  - (5) NewMasking.reg: the (RA,DEC) information for the masked-out regions defined in the 12 IA-band images by Y. Shioya
- output files:
  - (1) XMM_MatchedCatalog.dat: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the XMM-Newton source catalog. The cross-matching condition is that the angular separation between the (RA,DEC) of the COSMOS photometric catalog and the XMM-Newton source catalog is less than or equal to the positional error of the XMM-Newton, which is different for each object.
  - (2) VLA_MatchedCatalog.dat: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the VLA source catalog. The cross-matching condition is that the angular separation between the (RA,DEC) of the COSMOS photometric catalog and the VLA source catalog is less than or equal to 1 arcsec.
- usage (see script, Step0_CrossMatching.sh):
```
./Step0_CrossMatching.out AbsolutePathOfInputFiles AbsolutePathOfOutputFiles
(e.g.,) ./Step0_CrossMatching.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step0/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/
```

↑

Step 1 Related †

the script to execute the sample selection of Step 1: Step1.sh
the program to make the catalog for Step 1 (written by MARK): Step1.f90
- input files:
  - (1) cosmos_phot_20120626bs.tbl?: the latest version of i-band selected photometric catalog including the UltraVISTA DR1 data
  - (2) photoz_zml_vers2.0_010312-fulls.out?: the latest version of photo-z catalog
  - (3) NewMasking.reg: the (RA,DEC) information for the masked-out regions defined in the 12 IA-band images by Y. Shioya
  - (4) allIAexObj_RA_DEC.txt: IDs of the Step 1 IA-excess candidates which have been already asked for cross-matching with the Chandra to S. Toft
  - (5) Chandra_AGN_all.txt: IDs of the AGN candidates detected in Chandra
  - (6) XMM_MatchedCatalog.dat: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the XMM-Newton source catalog
  - (7) VLA_MatchedCatalog.dat: the cross-matched catalog between the objects listed in the COSMOS photometric catalog and the VLA source catalog
- output files:
  - (1) Step1.dat: all-in-one catalog of the Step 1 selected IA-excess candidates
  - (2) IdonBand.dat: a catalog of the Step 1 selected IA-excess candidates in the previous format defined by Y. Shioya
- usage (see above script, Step1.sh):
```
./Step1.out AbsolutePathOfInputFiles AbsolutePathOfOutputFiles
(e.g.,) ./Step1.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step0/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/
```
  - all of the input files must be located in the directory represented as AbsolutePathOfInputFiles?
  - all of the output files are written in the directory represented as AbsolutePathOfOutputFiles?

the program to classify the objects according to their combination of excess IA bands (written by Y. Shioya, modified by MARK): Step1_makeGroup.f90
- input file: IdonBands.dat, in which the IA-excess candidates are listed in ascending order of an integer that represents the sum of excess IA bands
- output files:
  - (1) group_ionband.dat: a list of the existing combination of the excess IA bands
  - (2) group/****.txt (**** = 0001--9999, which represents the combination of the excess IA bands, group_150826.tar.gz): catalogs of the IA-excess candidates with the combination of the excess IA bands
- usage:
```
./Step1_makeGroup.out AbsolutePathOfInputFiles
(e.g.,) ./Step1_makeGroup.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/
```

↑

Step 2 Related †

the script to execute the sample selection of Step 2: Step2.sh
the program to make the catalog for Step 2: Step2_zph.f90
- input files:
  - (1) Step1.dat: the resultant catalog of the IA-excess candidates selected in Step1
  - (2) PZ/ID.{pz,pz2}: the tables in which the resultant likelihood p(z) and χ_{ν}^2(z) evaluated using EAZY for each object are written
  - (3) IDlist_EAZY: the list of the IDs which have EAZY output
- output files:
  - (1) Step2.dat: all-in-one catalog of the Step 2 selected IA-excess candidates
  - (2) IdIsol4.txt: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya
  - (3) Nexge5.txt: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya
  - (4) lineID.txt: a catalog of the Step 2 selected IA-excess candidates in the previous format defined by Y. Shioya
- usage (see above script, Step2.sh):
```
./Step2_zph.out AbsolutePathOfStep1.dat AbsolutePathOfOutputFiles
(e.g.,) ./Step2_zph.out /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step1/ /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step2/
```
  - all of the input files other than Step1.dat must be located in the directory at which the source code is located
  - all of the output files are written in the directory represented as AbsolutePathOfOutputFiles?

↑

Step 3 Related †

↑

Making SED templates for SED fitting †

the script to make SED templates for SED fitting: Step3_makeSEDtemplate.sh
the program to make SED templates for SED fitting: &ref(): File not found: "Step3_makeSEDtemplate.f" at page "Transfer-Step3-Catalogs";
- input files:
  - (1) filter_cosmos37.dat: data file in which transmission curves of all of the filter used in the SED fitting are given
  - (2) BC03_TemplateList_young.dat: name list of the BC03 templates used to make SED templates for young ages
  - (3) BC03_TemplateList_old.dat: name list of the BC03 templates used to make SED templates for old ages (only for z < 2.5)
  - (4) A0V_KUR_BB.SED: Kurucz's model for Alpha Lyrae
  - (5) time_BC03.dat: time array of the BC03 templates
  - (6) bc03sed/***: BC03 SED templates
  - (7) list of redshifts for which the SED templates are made (sample list: test.in)
- output files:
  - (1) SEDtemp_z*p***_young.dat: SED templates of young ages used for SED fitting analysis in Step 3
  - (2) (only at z < 2.5) SEDtemp_z*p***_old.dat: SED templates of old ages used for SED fitting analysis in Step 3
- usage (see above script, Step3_makeSEDtemplate.sh):
```
./Step3_makeSEDtemplate.out InputFileName AbsolutePathOfOutputFiles
(e.g.,) ./Step3_makeSEDtemplate.out test.in /home/kobayasi/work/EhimeUniv/COSMOS20/IAexcess-Lya/data/Step3/template/
```
  - all of the input files must be located in the directory with the name of inpdata which locates on the directory where the source code is located
  - all of the output files are written in the directory represented as AbsolutePathOfOutputFiles?

the program to make simultaneously both (1) the input files for the above program and (2) shell scripts to run the program: makescripts.f90
- this program make Ndiv files and Ndiv scripts from a redshift list of a certain type of emitter candidates, where Ndiv is a parameter given to run the program
- input file: one of the following three redshift lists
  - (1) makeSEDtemplate_LAE: a list of z_ph determined in Step 2 for the LAE candidates
  - (2) makeSEDtemplate_nonLAE: a list of z_ph determined in Step 2 for the non-LAE emitter candidates
  - (3) makeSEDtemplate_others: a list of z_ph determined in Step 2 for others
- output files:
  - (1) input files for the above program: (ex.) makeSEDtemplate_LAE1.in
  - (2) shell scripts to run the above program: (ex.) Step3_makeSEDtemplate.sh
- usage:
```
./makescripts.out InputListName Ndiv AbsolutePathOfOutputDirectory
(e.g.,) ./makescripts.out makeSEDtemplate_others 48 /home/kobayashi/COSMOS20/source/Step3/ /net/newngli/data/kobayashi/template/others/
```
  - the input files which are output of this program are written in inpdata/ and the shell scripts are written in scripts/

↑

Step 4 Related †

↑

Catalogs †

↑

Step 1 Related? †

catalog of 6208 IA-excess candidates selected in Step 1: Step1.dat
- format is written as headers in the above catalog and in this page?
- (2015/08/16) Note: AGN flags for Chandra, XMM, and VLA are not complete yet.

↑